Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3877773..3878605 | Replicon | chromosome |
| Accession | NZ_CP060867 | ||
| Organism | Escherichia coli strain EC29 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A7ZVJ9 |
| Locus tag | H9211_RS18750 | Protein ID | WP_000854765.1 |
| Coordinates | 3878231..3878605 (+) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | H9211_RS18745 | Protein ID | WP_001295723.1 |
| Coordinates | 3877773..3878141 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9211_RS18710 (3873437) | 3873437..3874117 | + | 681 | WP_001282921.1 | WYL domain-containing protein | - |
| H9211_RS18715 (3874265) | 3874265..3874942 | + | 678 | WP_001097302.1 | hypothetical protein | - |
| H9211_RS18720 (3874948) | 3874948..3875181 | + | 234 | WP_001278293.1 | DUF905 family protein | - |
| H9211_RS18725 (3875271) | 3875271..3876089 | + | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| H9211_RS18730 (3876355) | 3876355..3876834 | + | 480 | WP_057109541.1 | antirestriction protein | - |
| H9211_RS18735 (3876850) | 3876850..3877326 | + | 477 | WP_001186774.1 | RadC family protein | - |
| H9211_RS18740 (3877389) | 3877389..3877610 | + | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| H9211_RS18745 (3877773) | 3877773..3878141 | + | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| H9211_RS18750 (3878231) | 3878231..3878605 | + | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin |
| H9211_RS18755 (3878605) | 3878605..3878808 | + | 204 | WP_001398797.1 | DUF5983 family protein | - |
| H9211_RS18760 (3878833) | 3878833..3879027 | + | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| H9211_RS18765 (3879112) | 3879112..3879954 | + | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| H9211_RS18770 (3880235) | 3880235..3880771 | - | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| H9211_RS18775 (3880773) | 3880773..3881951 | - | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| H9211_RS18780 (3881948) | 3881948..3882925 | - | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| H9211_RS18785 (3882928) | 3882928..3883527 | - | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13970.98 Da Isoelectric Point: 7.2909
>T171241 WP_000854765.1 NZ_CP060867:3878231-3878605 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T171241 NZ_CP077867:c788713-788393 [Staphylococcus aureus]
ATGAATTGGGAAATTAAAGATTTAATGTGTGACATTGAAGTGATAAAACAAAAAATTAATGATGTAGCTACCAAACATGC
TTGGTTTGTTGAAGATAGATTTGTAAAAAATGAATTAGAAACAAAACGGGAACATATTAATTTTTCTGCTAGCTATTTAG
AACATCGTATACAAAATGAACATACAGTTGAGTTATTACATGTGTACTTAAAAGAATTCAGTGAACTTATACAAAAATTT
CATGAAATAGAAAAAGCGTCATCAGAGAACTTTGACGAGGAATCAGATGACGCAAAGAATTCAATAAAAGTAGCAGAGTA
A
ATGAATTGGGAAATTAAAGATTTAATGTGTGACATTGAAGTGATAAAACAAAAAATTAATGATGTAGCTACCAAACATGC
TTGGTTTGTTGAAGATAGATTTGTAAAAAATGAATTAGAAACAAAACGGGAACATATTAATTTTTCTGCTAGCTATTTAG
AACATCGTATACAAAATGAACATACAGTTGAGTTATTACATGTGTACTTAAAAGAATTCAGTGAACTTATACAAAAATTT
CATGAAATAGAAAAAGCGTCATCAGAGAACTTTGACGAGGAATCAGATGACGCAAAGAATTCAATAAAAGTAGCAGAGTA
A
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT171241 WP_001295723.1 NZ_CP060867:3877773-3878141 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT171241 NZ_CP077867:c788925-788716 [Staphylococcus aureus]
ATGAATAATGAACAAAAAGAAGTAATAGAACACTTGGTTTATCAACTTGAGTTAAGTGTCATGAATAATTTGGAAAGTTA
CGAACACACAGAATATGTTAATGGTATTGAAGTGGTTTCAGAGATCAGTCGTGAAAAGCACTTAGAATTGATAATGAAAT
GGTGCGCACAAGAATTAAAGAATAATTTTCAATTAGAGAAAGGAGAATAA
ATGAATAATGAACAAAAAGAAGTAATAGAACACTTGGTTTATCAACTTGAGTTAAGTGTCATGAATAATTTGGAAAGTTA
CGAACACACAGAATATGTTAATGGTATTGAAGTGGTTTCAGAGATCAGTCGTGAAAAGCACTTAGAATTGATAATGAAAT
GGTGCGCACAAGAATTAAAGAATAATTTTCAATTAGAGAAAGGAGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|