Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3894254..3894397 | Replicon | chromosome |
| Accession | NZ_CP060849 | ||
| Organism | Salmonella enterica strain 724 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3894256..3894359 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3894254..3894397 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAR31_RS18750 | 3890926..3891171 | + | 246 | WP_001051755.1 | hypothetical protein | - |
| IAR31_RS18755 | 3891355..3891558 | + | 204 | WP_024798203.1 | FimD/PapC N-terminal domain-containing protein | - |
| IAR31_RS18760 | 3892255..3893268 | + | 1014 | WP_071991613.1 | acyltransferase family protein | - |
| IAR31_RS18765 | 3893387..3894125 | + | 739 | Protein_3656 | tyrosine-type recombinase/integrase | - |
| - | 3894254..3894397 | + | 144 | - | - | Antitoxin |
| - | 3894256..3894359 | - | 104 | - | - | Toxin |
| IAR31_RS18770 | 3894499..3894852 | - | 354 | WP_126524015.1 | YebY family protein | - |
| IAR31_RS18775 | 3894869..3895744 | - | 876 | WP_000979699.1 | copper homeostasis membrane protein CopD | - |
| IAR31_RS18780 | 3895745..3896119 | - | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| IAR31_RS18785 | 3896257..3896487 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| IAR31_RS18790 | 3896595..3897251 | + | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| IAR31_RS18795 | 3897275..3897973 | + | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171168 NZ_CP060849:c3894359-3894256 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT171168 NZ_CP060849:3894254-3894397 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
