Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2203805..2203937 | Replicon | chromosome |
| Accession | NZ_CP060818 | ||
| Organism | Pantoea ananatis strain Lstri | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2203840..2203937 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2203805..2203937 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAQ00_RS10440 (IAQ00_10380) | 2198988..2201060 | + | 2073 | WP_110983047.1 | prolyl oligopeptidase family serine peptidase | - |
| IAQ00_RS10445 (IAQ00_10385) | 2201044..2201715 | - | 672 | WP_014593875.1 | exodeoxyribonuclease X | - |
| IAQ00_RS10450 (IAQ00_10390) | 2201715..2201945 | - | 231 | WP_058705643.1 | DNA polymerase III subunit theta | - |
| IAQ00_RS10455 (IAQ00_10395) | 2202096..2202470 | + | 375 | WP_047714945.1 | copper homeostasis periplasmic binding protein CopC | - |
| IAQ00_RS10460 (IAQ00_10400) | 2202475..2203350 | + | 876 | WP_028723424.1 | copper homeostasis membrane protein CopD | - |
| IAQ00_RS10465 (IAQ00_10405) | 2203378..2203725 | + | 348 | WP_028723425.1 | YebY family protein | - |
| - | 2203805..2203937 | - | 133 | - | - | Antitoxin |
| - | 2203840..2203937 | + | 98 | - | - | Toxin |
| IAQ00_RS10470 (IAQ00_10410) | 2204077..2205621 | - | 1545 | WP_252294907.1 | methyl-accepting chemotaxis protein | - |
| IAQ00_RS10475 (IAQ00_10415) | 2206112..2206816 | - | 705 | WP_047714948.1 | GntR family transcriptional regulator | - |
| IAQ00_RS10480 (IAQ00_10420) | 2207097..2208719 | + | 1623 | WP_252294908.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T171050 NZ_CP060818:2203840-2203937 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATCAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATCAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT171050 NZ_CP060818:c2203937-2203805 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTGA
TAGAGGCTTTCGCCTTGCTTTTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTGA
TAGAGGCTTTCGCCTTGCTTTTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
