Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980573..1980717 | Replicon | chromosome |
| Accession | NZ_CP060807 | ||
| Organism | Klebsiella variicola strain KP2757 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980609..1980711 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980573..1980717 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAP99_RS09575 | 1975703..1977763 | + | 2061 | WP_187726368.1 | oligopeptidase B | - |
| IAP99_RS09580 | 1977767..1978426 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| IAP99_RS09585 | 1978505..1978735 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| IAP99_RS09590 | 1978849..1979223 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| IAP99_RS09595 | 1979227..1980096 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| IAP99_RS09600 | 1980113..1980451 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1980573..1980717 | - | 145 | - | - | Antitoxin |
| - | 1980609..1980711 | + | 103 | - | - | Toxin |
| IAP99_RS09605 | 1981096..1981239 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| IAP99_RS09610 | 1981343..1982311 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| IAP99_RS09615 | 1982468..1983121 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| IAP99_RS09620 | 1983118..1983309 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IAP99_RS09625 | 1983407..1983646 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IAP99_RS09630 | 1983762..1985195 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T171020 NZ_CP060807:1980609-1980711 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT171020 NZ_CP060807:c1980717-1980573 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
