Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3381506..3381651 | Replicon | chromosome |
| Accession | NZ_CP060744 | ||
| Organism | Klebsiella pneumoniae strain KP120 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3381513..3381615 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3381506..3381651 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAI03_RS16470 | 3377039..3378472 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IAI03_RS16475 | 3378588..3378827 | + | 240 | WP_002911393.1 | YebV family protein | - |
| IAI03_RS16480 | 3378925..3379116 | + | 192 | WP_002911395.1 | YebW family protein | - |
| IAI03_RS16485 | 3379113..3379766 | - | 654 | WP_071570906.1 | protein-serine/threonine phosphatase | - |
| IAI03_RS16490 | 3379923..3380891 | + | 969 | WP_168786284.1 | VirK/YbjX family protein | - |
| IAI03_RS16495 | 3380996..3381139 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3381506..3381651 | + | 146 | - | - | Antitoxin |
| - | 3381513..3381615 | - | 103 | - | - | Toxin |
| IAI03_RS16500 | 3381774..3382112 | - | 339 | WP_004189269.1 | YebY family protein | - |
| IAI03_RS16505 | 3382129..3382998 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| IAI03_RS16510 | 3383002..3383376 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IAI03_RS16515 | 3383489..3383719 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IAI03_RS16520 | 3383798..3384457 | + | 660 | WP_187475335.1 | exodeoxyribonuclease X | - |
| IAI03_RS16525 | 3384461..3386521 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T170917 NZ_CP060744:c3381615-3381513 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170917 NZ_CP060744:3381506-3381651 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
