Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2818340..2818483 | Replicon | chromosome |
| Accession | NZ_CP060737 | ||
| Organism | Enterobacter roggenkampii isolate enterobacter cloacae | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2818345..2818448 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2818340..2818483 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9W87_RS13405 | 2814597..2816039 | + | 1443 | WP_047747391.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H9W87_RS13410 | 2816145..2816384 | + | 240 | WP_008500472.1 | YebV family protein | - |
| H9W87_RS13415 | 2816419..2817063 | - | 645 | WP_047747390.1 | protein-serine/threonine phosphatase | - |
| H9W87_RS13420 | 2817240..2818181 | + | 942 | WP_047747389.1 | VirK/YbjX family protein | - |
| - | 2818340..2818483 | + | 144 | - | - | Antitoxin |
| - | 2818345..2818448 | - | 104 | - | - | Toxin |
| H9W87_RS13425 | 2818587..2818925 | - | 339 | WP_008500468.1 | YebY family protein | - |
| H9W87_RS13430 | 2818942..2819811 | - | 870 | WP_047747388.1 | copper homeostasis membrane protein CopD | - |
| H9W87_RS13435 | 2819813..2820184 | - | 372 | WP_047747387.1 | CopC domain-containing protein YobA | - |
| H9W87_RS13440 | 2820322..2820552 | + | 231 | WP_187797624.1 | DNA polymerase III subunit theta | - |
| H9W87_RS13445 | 2820663..2821313 | + | 651 | WP_032675034.1 | carbon-nitrogen hydrolase family protein | - |
| H9W87_RS13450 | 2821338..2822000 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170899 NZ_CP060737:c2818448-2818345 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT170899 NZ_CP060737:2818340-2818483 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
