Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2784502..2784645 | Replicon | chromosome |
| Accession | NZ_CP060733 | ||
| Organism | Enterobacter roggenkampii strain Ed-982 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2784507..2784610 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2784502..2784645 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9W86_RS13225 | 2780758..2782200 | + | 1443 | WP_187808804.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H9W86_RS13230 | 2782307..2782546 | + | 240 | WP_008500472.1 | YebV family protein | - |
| H9W86_RS13235 | 2782581..2783225 | - | 645 | WP_023344417.1 | protein-serine/threonine phosphatase | - |
| H9W86_RS13240 | 2783402..2784343 | + | 942 | WP_025910080.1 | VirK/YbjX family protein | - |
| - | 2784502..2784645 | + | 144 | - | - | Antitoxin |
| - | 2784507..2784610 | - | 104 | - | - | Toxin |
| H9W86_RS13245 | 2784749..2785087 | - | 339 | WP_008500468.1 | YebY family protein | - |
| H9W86_RS13250 | 2785104..2785973 | - | 870 | WP_070533205.1 | copper homeostasis membrane protein CopD | - |
| H9W86_RS13255 | 2785975..2786346 | - | 372 | WP_039266604.1 | CopC domain-containing protein YobA | - |
| H9W86_RS13260 | 2786484..2786714 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| H9W86_RS13265 | 2786825..2787475 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| H9W86_RS13270 | 2787500..2788162 | + | 663 | WP_070533208.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170880 NZ_CP060733:c2784610-2784507 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT170880 NZ_CP060733:2784502-2784645 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
