Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE-HTH_XRE |
Location | 4234870..4235623 | Replicon | chromosome |
Accession | NZ_CP060726 | ||
Organism | Providencia rettgeri strain YPR25 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | H9X60_RS19510 | Protein ID | WP_096864327.1 |
Coordinates | 4235189..4235623 (-) | Length | 145 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | H9X60_RS19505 | Protein ID | WP_004905885.1 |
Coordinates | 4234870..4235199 (-) | Length | 110 a.a. |
Genomic Context
Location: 4232444..4234129 (1686 bp)
Type: Others
Protein ID: WP_004905883.1
Type: Others
Protein ID: WP_004905883.1
Location: 4234149..4234865 (717 bp)
Type: Others
Protein ID: WP_004905884.1
Type: Others
Protein ID: WP_004905884.1
Location: 4230815..4231786 (972 bp)
Type: Others
Protein ID: WP_004905881.1
Type: Others
Protein ID: WP_004905881.1
Location: 4234870..4235199 (330 bp)
Type: Antitoxin
Protein ID: WP_004905885.1
Type: Antitoxin
Protein ID: WP_004905885.1
Location: 4235189..4235623 (435 bp)
Type: Toxin
Protein ID: WP_096864327.1
Type: Toxin
Protein ID: WP_096864327.1
Location: 4235732..4237663 (1932 bp)
Type: Others
Protein ID: WP_004905887.1
Type: Others
Protein ID: WP_004905887.1
Location: 4237834..4238700 (867 bp)
Type: Others
Protein ID: WP_004905888.1
Type: Others
Protein ID: WP_004905888.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
H9X60_RS19490 | 4230815..4231786 | - | 972 | WP_004905881.1 | efflux RND transporter periplasmic adaptor subunit | - |
H9X60_RS19495 | 4232444..4234129 | + | 1686 | WP_004905883.1 | sensor histidine kinase | - |
H9X60_RS19500 | 4234149..4234865 | + | 717 | WP_004905884.1 | two-component system response regulator BtsR | - |
H9X60_RS19505 | 4234870..4235199 | - | 330 | WP_004905885.1 | helix-turn-helix domain-containing protein | Antitoxin |
H9X60_RS19510 | 4235189..4235623 | - | 435 | WP_096864327.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
H9X60_RS19515 | 4235732..4237663 | - | 1932 | WP_004905887.1 | DEAD/DEAH family ATP-dependent RNA helicase | - |
H9X60_RS19520 | 4237834..4238700 | - | 867 | WP_004905888.1 | lipoprotein NlpI | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 145 a.a. Molecular weight: 16141.82 Da Isoelectric Point: 9.3330
>T170869 WP_096864327.1 NZ_CP060726:c4235623-4235189 [Providencia rettgeri]
MALATIVIGTTWRVVVAFYKISSFKRSTKKIKIMDKHLLKAANEVLAGVYEADLGSGVIKKRIAINGKGKSGGVRVIIFF
KVSHHLFFADGWEKCNIAAKGVKEIEDDELDAYKNLSRLFLNYTDDKIADLVLHNILEELTDEQ
MALATIVIGTTWRVVVAFYKISSFKRSTKKIKIMDKHLLKAANEVLAGVYEADLGSGVIKKRIAINGKGKSGGVRVIIFF
KVSHHLFFADGWEKCNIAAKGVKEIEDDELDAYKNLSRLFLNYTDDKIADLVLHNILEELTDEQ
Download Length: 435 bp
>T170869 NZ_CP077760:1172767-1172985 [Salmonella enterica subsp. enterica serovar Gallinarum]
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
Antitoxin
Download Length: 110 a.a. Molecular weight: 12235.50 Da Isoelectric Point: 10.3803
>AT170869 WP_004905885.1 NZ_CP060726:c4235199-4234870 [Providencia rettgeri]
MSNKLENMLELAKELHQVDAAPKSLVTDLEQKVGNRKINNKIKVVPMMSGAQIKQLRAQYGMSQAMLALALGMSKESVSK
WEREEKKPSGPALRMLHLIEQRGPEILII
MSNKLENMLELAKELHQVDAAPKSLVTDLEQKVGNRKINNKIKVVPMMSGAQIKQLRAQYGMSQAMLALALGMSKESVSK
WEREEKKPSGPALRMLHLIEQRGPEILII
Download Length: 330 bp
>AT170869 NZ_CP077760:1172365-1172739 [Salmonella enterica subsp. enterica serovar Gallinarum]
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCCAATCCTGTTAGTTTGTCTTGTTAA
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCCAATCCTGTTAGTTTGTCTTGTTAA