170760

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 4822645..4823189 Replicon chromosome
Accession NZ_CP060704
Organism Chitinimonas koreensis strain R2A43-10

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag H9L41_RS20400 Protein ID WP_028444852.1
Coordinates 4822645..4822935 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag H9L41_RS20405 Protein ID WP_265583858.1
Coordinates 4822923..4823189 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H9L41_RS20380 (H9L41_20380) 4817910..4819412 + 1503 WP_028444856.1 hypothetical protein -
H9L41_RS20385 (H9L41_20385) 4819405..4820877 + 1473 WP_028444855.1 exodeoxyribonuclease I -
H9L41_RS20390 (H9L41_20390) 4821124..4821513 + 390 WP_028444854.1 DUF488 family protein -
H9L41_RS20395 (H9L41_20395) 4821744..4822616 + 873 WP_034606071.1 dTDP-4-dehydrorhamnose reductase -
H9L41_RS20400 (H9L41_20400) 4822645..4822935 - 291 WP_028444852.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H9L41_RS20405 (H9L41_20405) 4822923..4823189 - 267 WP_265583858.1 ribbon-helix-helix protein, CopG family Antitoxin
H9L41_RS20410 (H9L41_20410) 4823346..4823909 - 564 WP_034606069.1 DUF5610 domain-containing protein -
H9L41_RS20415 (H9L41_20415) 4824107..4825522 - 1416 WP_028444850.1 FAD-dependent oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-38)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10944.50 Da        Isoelectric Point: 9.3501

>T170760 WP_028444852.1 NZ_CP060704:c4822935-4822645 [Chitinimonas koreensis]
MPRLIWSPQALHDVQRLYRFLAANNADAARRAVKAIRDGVKLLASQPGVGRPAEEMEPEYREWLIDFGDSGYIALYRYDG
KTALILAVRHQREAGY

Download         Length: 291 bp

>T170760 NZ_CP077699:c1313439-1313257 [Salmonella enterica subsp. enterica]
ATGAAATATAACGAGTTCAGGCGGTGGCTCATCCAACAGGGTGCAAAGTTCATAAATGCACCGGATGGCGGCAGCCATCA
GCGTGTCATACTGAACGGGAAAGAATCTGTATTTCCCTGCCATGGCGCCAAAGAAATGCCGGAGCCGCTCAGAAAGAAAA
TACTCAAGGATTTGGGGCTTTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10103.28 Da        Isoelectric Point: 5.1991

>AT170760 WP_265583858.1 NZ_CP060704:c4823189-4822923 [Chitinimonas koreensis]
VAIKIDPETRERIKRLAAARDRTPHWIMREAISQYVEREEKREALRQDGIMAWNAYHANGLHATADEADAWLAELEAGRD
VEPPECHG

Download         Length: 267 bp

>AT170760 NZ_CP077699:c1313228-1312794 [Salmonella enterica subsp. enterica]
ATGTTTAACTATGCTGTGAAACCTGAGTATGATCCCGCAACAGAAAGCTGGGTTGTCACATGCCGGGATCTGCCACTATT
TAACTCCGTGAGTTTCAGCATTGACGATGCGCTTCTTGAGGCGGTTGATGGTGCCATCGTTGCACTCTCAATCGAAATCG
ACGCACGCCGTCCAGTCCCCATCGCCAGCCAGCCCGAAGAAGGGGAGTATGTCATTCATCTTCCCGTTCTGGTTGTGATG
AAAGCCGCGCTGCATAATGCAATGATTTCCACAGGGACACGAAAATCCGATCTTGCCCGAACTATGGGGATGAAAGGTCC
CCAGATAGATCGCCTCCTGGATGTTTGCCACTCATCGAAAGTGGAAACAGTAGAACTCGCTCTTCAGCAACTCAACCGGA
CTGTACAGATAAGCGTTGATAACGTTGCGGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References