Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1567967..1568112 | Replicon | chromosome |
| Accession | NZ_CP060674 | ||
| Organism | Salmonella enterica strain 190729_4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1568007..1568110 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1567967..1568112 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9Q84_RS07480 | 1564393..1565091 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| H9Q84_RS07485 | 1565115..1565771 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| H9Q84_RS07490 | 1565879..1566109 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| H9Q84_RS07495 | 1566247..1566621 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| H9Q84_RS07500 | 1566622..1567497 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| H9Q84_RS07505 | 1567514..1567867 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 1567967..1568112 | - | 146 | - | - | Antitoxin |
| - | 1568007..1568110 | + | 104 | - | - | Toxin |
| H9Q84_RS07510 | 1568250..1569329 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| H9Q84_RS07515 | 1569304..1569582 | - | 279 | WP_001575998.1 | excisionase | - |
| H9Q84_RS07520 | 1569996..1571975 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| H9Q84_RS07525 | 1572294..1572392 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| H9Q84_RS07530 | 1572694..1572912 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 1562305..1622011 | 59706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170657 NZ_CP060674:1568007-1568110 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170657 NZ_CP060674:c1568112-1567967 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
