Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 2280871..2281398 Replicon chromosome
Accession NZ_CP060592
Organism Rouxiella badensis strain C173

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag H2866_RS10560 Protein ID WP_192504368.1
Coordinates 2281123..2281398 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag H2866_RS10555 Protein ID WP_192504367.1
Coordinates 2280871..2281119 (+) Length 83 a.a.

Genomic Context

H2866_RS10530H2866_RS10535H2866_RS10540H2866_RS10545H2866_RS10550H2866_RS10555H2866_RS10560H2866_RS10580H2866_RS10585H2866_RS10590H2866_RS10525H2866_RS10565H2866_RS10570H2866_RS10575
Location: 2277891..2278394 (504 bp)
Type: Others
Protein ID: WP_192504439.1
Location: 2278663..2279091 (429 bp)
Type: Others
Protein ID: WP_192504440.1
Location: 2279105..2279440 (336 bp)
Type: Others
Protein ID: WP_192504364.1
Location: 2279507..2279827 (321 bp)
Type: Others
Protein ID: WP_192504365.1
Location: 2279941..2280774 (834 bp)
Type: Others
Protein ID: WP_192504366.1
Location: 2280871..2281119 (249 bp)
Type: Antitoxin
Protein ID: WP_192504367.1
Location: 2281123..2281398 (276 bp)
Type: Toxin
Protein ID: WP_192504368.1
Location: 2283293..2283370 (78 bp)
Type: Others
Protein ID: WP_081601429.1
Location: 2283604..2283969 (366 bp)
Type: Others
Protein ID: WP_165429822.1
Location: 2283884..2286277 (2394 bp)
Type: Others
Protein ID: WP_192504371.1
Location: 2276921..2277562 (642 bp)
Type: Others
Protein ID: WP_192504363.1
Location: 2281695..2282183 (489 bp)
Type: Others
Protein ID: Protein_2042
Location: 2282180..2282296 (117 bp)
Type: Others
Protein ID: WP_192504369.1
Location: 2282414..2283034 (621 bp)
Type: Others
Protein ID: WP_192504370.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
H2866_RS105252276921..2277562-642WP_192504363.1hypothetical protein-
H2866_RS105302277891..2278394+504WP_192504439.1hypothetical protein-
H2866_RS105352278663..2279091+429WP_192504440.1DNA repair protein RadC-
H2866_RS105402279105..2279440+336WP_192504364.1type IV toxin-antitoxin system YeeU family antitoxin-
H2866_RS105452279507..2279827+321WP_192504365.1TA system toxin CbtA family protein-
H2866_RS105502279941..2280774+834WP_192504366.1DUF4942 domain-containing protein-
H2866_RS105552280871..2281119+249WP_192504367.1ribbon-helix-helix domain-containing proteinAntitoxin
H2866_RS105602281123..2281398+276WP_192504368.1type II toxin-antitoxin system RelE/ParE family toxinToxin
H2866_RS105652281695..2282183-489Protein_2042transposase family protein-
H2866_RS105702282180..2282296-117WP_192504369.1transposase-
H2866_RS105752282414..2283034-621WP_192504370.1hypothetical protein-
H2866_RS105802283293..2283370+78WP_081601429.1hypothetical protein-
H2866_RS105852283604..2283969+366WP_165429822.1integrase core domain-containing protein-
H2866_RS105902283884..2286277+2394WP_192504371.1family 20 glycosylhydrolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--2271930..228303411104


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-43)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 11106.43 Da        Isoelectric Point: 5.5782

>T170508 WP_192504368.1 NZ_CP060592:2281123-2281398 [Rouxiella badensis]
MEIQWTQKAQDDLERIYRFACQYSRQHADNVLERLIIGTSGLADHPRIGVPQTRYEPREVRKILFDDYDVHYEIQRDTIY
IVDLWHTREDR

Download         Length: 276 bp

>T170508 NZ_CP077421:849870-850286 [Pectobacterium polaris]
GTGAGTCGCTTGTTCATGCTGGATACCAATATCTGTTCCTTCATTATGCGTGAACACCCGACAGCGATGATTGACAAGCT
ACAGCAGTGCACATTGCGGCGTGATCGGATCGTGGTCTCTGCTATCACTTACGCTGAAATGCGTTTCGGGGCGGTTGGAA
AAAAAGCTTCGCCACGCCATATGCAACTAGTTGATGCTTTCTGTCGTCGGCTCGATGCGGTGTTACCTTGGGATAGCGCA
GCAGTAGACGCCACTACGAAAATCAAAATTGCGTTAGCCGCCGCAGGCACGCCTATTGGCCCAAATGATACGGCCATCGC
TGGTCATGCCATCAGCGTTAAGGCCATATTGGTTACCAATAACCTGAGAGAGTTTGAGCGAGTACAAGGACTAACGTTGG
AAGATTGGGTTAACTAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9121.53 Da        Isoelectric Point: 8.7560

>AT170508 WP_192504367.1 NZ_CP060592:2280871-2281119 [Rouxiella badensis]
MRQLAKQTISAQIPAELAAAVENLAIELDRSKSWVIKEALTAMIEERERRHQQILKGLADVDAGRVVSHADVVDFANKLK
KS

Download         Length: 249 bp

>AT170508 NZ_CP077421:849646-849873 [Pectobacterium polaris]
ATGCGTATTGTTTCGGTATTTAAAAATGGTAACAACCGTGCCATTCGCTTGCCACGTGATATGGACTTTGAAGGGGTCAA
CGAACTGGAGATCGTGCGTGAGGGGGATACCATCATGCTGCGTCCGGTTAAACCCAATTGGCATTCATTTTTGCAAGAAG
AGCGCGCTGACGCTGACTTTATGACAGAACGTCAGGATGTAGTCGAAGAGGGGAGATTCGAACTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References