Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1612364..1612511 | Replicon | chromosome |
| Accession | NZ_CP060441 | ||
| Organism | Citrobacter cronae strain S175-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1612373..1612476 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1612364..1612511 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H3W50_RS08060 | 1609583..1610623 | + | 1041 | WP_241424480.1 | RecT family recombinase | - |
| H3W50_RS08065 | 1610662..1610904 | + | 243 | WP_181216653.1 | DUF4060 family protein | - |
| H3W50_RS08070 | 1610969..1611241 | + | 273 | WP_016156226.1 | excisionase | - |
| H3W50_RS08075 | 1611210..1612295 | + | 1086 | WP_241424481.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1612364..1612511 | + | 148 | - | - | Antitoxin |
| - | 1612373..1612476 | - | 104 | - | - | Toxin |
| H3W50_RS08080 | 1612632..1612970 | - | 339 | WP_038641391.1 | YebY family protein | - |
| H3W50_RS08085 | 1612991..1613863 | - | 873 | WP_038641393.1 | copper homeostasis membrane protein CopD | - |
| H3W50_RS08090 | 1613867..1614241 | - | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| H3W50_RS08095 | 1614385..1614615 | + | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| H3W50_RS08100 | 1614722..1615378 | + | 657 | WP_038641399.1 | carbon-nitrogen hydrolase family protein | - |
| H3W50_RS08105 | 1615401..1616063 | + | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1557598..1616063 | 58465 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170401 NZ_CP060441:c1612476-1612373 [Citrobacter cronae]
GGCAGGGTAACTTAGCCTGCATTTATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTTATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT170401 NZ_CP060441:1612364-1612511 [Citrobacter cronae]
TAATCATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATAAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
TAATCATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATAAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
