Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1969381..1969526 | Replicon | chromosome |
| Accession | NZ_CP060421 | ||
| Organism | Klebsiella pneumoniae strain BA2105 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1969417..1969519 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1969381..1969526 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBJ34_RS09895 | 1964511..1966571 | + | 2061 | WP_064144834.1 | oligopeptidase B | - |
| HBJ34_RS09900 | 1966575..1967234 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HBJ34_RS09905 | 1967313..1967543 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HBJ34_RS09910 | 1967656..1968030 | + | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| HBJ34_RS09915 | 1968034..1968903 | + | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| HBJ34_RS09920 | 1968920..1969258 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1969381..1969526 | - | 146 | - | - | Antitoxin |
| - | 1969417..1969519 | + | 103 | - | - | Toxin |
| HBJ34_RS09925 | 1969894..1970037 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HBJ34_RS09930 | 1970142..1971110 | - | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| HBJ34_RS09935 | 1971267..1971920 | + | 654 | WP_064144836.1 | protein-serine/threonine phosphatase | - |
| HBJ34_RS09940 | 1971917..1972108 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HBJ34_RS09945 | 1972206..1972445 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HBJ34_RS09950 | 1972561..1973994 | - | 1434 | WP_064144837.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T170357 NZ_CP060421:1969417-1969519 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170357 NZ_CP060421:c1969526-1969381 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
