Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 1212951..1213559 Replicon chromosome
Accession NZ_CP060398
Organism Synechococcus sp. CBW1002

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag H8F24_RS05800 Protein ID WP_197171363.1
Coordinates 1213269..1213559 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag H8F24_RS05795 Protein ID WP_197157703.1
Coordinates 1212951..1213259 (-) Length 103 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H8F24_RS05760 1208510..1210030 - 1521 WP_197171358.1 DUF1254 domain-containing protein -
H8F24_RS05765 1210075..1210383 - 309 Protein_1134 DUF1214 domain-containing protein -
H8F24_RS05770 1210400..1211570 - 1171 Protein_1135 IS3 family transposase -
H8F24_RS05775 1211618..1211917 + 300 WP_197171360.1 transposase -
H8F24_RS05780 1211905..1212174 - 270 WP_197171369.1 hypothetical protein -
H8F24_RS05785 1212229..1212564 - 336 WP_197171362.1 type II toxin-antitoxin system PemK/MazF family toxin -
H8F24_RS05790 1212558..1212815 - 258 WP_197157705.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
H8F24_RS05795 1212951..1213259 - 309 WP_197157703.1 putative addiction module antidote protein Antitoxin
H8F24_RS05800 1213269..1213559 - 291 WP_197171363.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H8F24_RS05805 1213694..1214864 + 1171 Protein_1142 IS3 family transposase -
H8F24_RS05810 1215070..1216584 + 1515 WP_197154224.1 IS66 family transposase -
H8F24_RS05815 1216902..1217807 + 906 WP_197171365.1 site-specific integrase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-89)

Antitoxin

Uncharacterized protein HI1420

(3-98)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10765.37 Da        Isoelectric Point: 10.2313

>T170313 WP_197171363.1 NZ_CP060398:c1213559-1213269 [Synechococcus sp. CBW1002]
MLEIRETSAYAAWFSSLRDRTAKARIDIRIRRLSLGNPGDVRPVGEGVSELRIHYGPGYRIYLTMQGEAIVILLAGGDKS
SQDQDIRLAKHLARNL

Download         Length: 291 bp

>T170313 NZ_CP077270:272505-272693 [Staphylococcus haemolyticus]
ATGAGTTTGCATTTAACTATATTGTTATGGCTTGGTATCATTTTTGTAATAGCAGCCTCAATTATATTGGGCTTATTACT
TAAATCTAAAAAAGAAGAACGTAAAGAATCATATTTAGGTTTTACCGTAATATTTTATATTTTTGGATTTGCTTTACTCA
TCTACGTATTCATATTTGGTATATTATAG

Antitoxin


Download         Length: 103 a.a.        Molecular weight: 10549.03 Da        Isoelectric Point: 4.9721

>AT170313 WP_197157703.1 NZ_CP060398:c1213259-1212951 [Synechococcus sp. CBW1002]
MTKTITTIWDPAAHLTTADDVAAYLEAALQDGDPQLVAAALGDIARAKGMSQIAREAGLGRESLYKSLSSSGNPELATVL
KVISALGLQLHVSATDNAKMAV

Download         Length: 309 bp

>AT170313 NZ_CP077270:272225-272482 [Staphylococcus haemolyticus]
ATGAATAATAATAAAATTTTTTGGATAAATATTTTTATGACGCTATTATTTTTGGGTTTCAATATCATTGTCACTTACAA
TGCAGACTTAGATGATTTCTTCTGGCTAATTCCAGGACTGACAATTAGTGGTATCACAATTGTACTAAGCTTAAGTACTG
CGCTCATTTGCAAGAACCTGGTTAGCGAAGTTATTTTTCTAATCAATATTGTTATGCTTTTATACTACATTTATCCTATG
GTATATACATTCTTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References