Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4237030..4237546 Replicon chromosome
Accession NZ_CP060289
Organism Pseudomonas protegens strain H1F10A

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag GGD92_RS19065 Protein ID WP_103740982.1
Coordinates 4237030..4237311 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag GGD92_RS19070 Protein ID WP_103740990.1
Coordinates 4237301..4237546 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GGD92_RS19045 4233282..4234172 - 891 WP_179598832.1 HlyD family secretion protein -
GGD92_RS19050 4234169..4234378 - 210 WP_011058538.1 DUF1656 domain-containing protein -
GGD92_RS19055 4234375..4236462 - 2088 WP_179598834.1 FUSC family protein -
GGD92_RS19060 4236459..4236887 - 429 WP_016967883.1 winged helix DNA-binding protein -
GGD92_RS19065 4237030..4237311 - 282 WP_103740982.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
GGD92_RS19070 4237301..4237546 - 246 WP_103740990.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
GGD92_RS19075 4237611..4237856 - 246 WP_016967889.1 DUF2789 domain-containing protein -
GGD92_RS19080 4237871..4238332 - 462 WP_016967891.1 YbaK/EbsC family protein -
GGD92_RS19085 4238441..4240051 - 1611 WP_179598836.1 glycosyltransferase family 39 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-68)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10812.70 Da        Isoelectric Point: 10.2298

>T170243 WP_103740982.1 NZ_CP060289:c4237311-4237030 [Pseudomonas protegens]
MTYSLEFLPSAHKEWSKLGHTLREQFKKKLAERLEVPRIPADALHGLPDCYKIKLKASGYRLVYQVIEERVVVCVVAVGK
RERGTVYEQARKR

Download         Length: 282 bp

>T170243 NZ_CP077233:c10694-10392 [Acinetobacter pittii]
ATGTACTCAATATATACCACAGAAGCCTTTGATGATTGGTTTACCAAGTTAAAAGATCAACAGGCAAAAAGACGCATACA
AGTCCGAATTGATCGGGTTGAAGATGGGAACTTTGGAGATACTGAACCAGTCGGTGAAGGTGTTTCTGAGTTACGTTTCT
TCTTTGGACCTGGCTATAGGATTTATTACTGCAAGCAAGGGCAAAGGGTCGTTATTCTCTTAGCAGGTGGAGATAAGTCT
ACGCAAAGTAAAGATATAAAACTTGCCCTACAATTAGCACAAGATTTAGAGGAGGAGTTGTAA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8741.07 Da        Isoelectric Point: 4.5164

>AT170243 WP_103740990.1 NZ_CP060289:c4237546-4237301 [Pseudomonas protegens]
MQSILADKAVSVSELKKNPSAVLSAAQGGPVAVLNHNRVMGYMVPAEVFEALMERLDDLELAEIVRARSHETPVPVSLDD
L

Download         Length: 246 bp

>AT170243 NZ_CP077233:c10391-10110 [Acinetobacter pittii]
ATGGCTATCAAACTTCGTAAATGGGATAGTGCTGAGCATCTTAAAACAGAAGAAGATATGCAAGCTTACCTACAAGCCTG
TATCGATGAATCTAATGGTGATGCTGCATTCATTGCTAAAGCTTTAGGTAACATTGCTAAAGCTAAAGGAATGGCTCAAT
TATCACGAGATACAGGTCTAGGCCGAGAAAGTCTTTACAAAGCACTTTCTGGTGATGTTAACCCTAGTTTTGATACTGTG
ATTAAAGTTGTAAAAGCACTGAATTTACGCTTAGCAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References