Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2133214..2133359 | Replicon | chromosome |
| Accession | NZ_CP060281 | ||
| Organism | Klebsiella pneumoniae strain ent1077 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2133250..2133352 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2133214..2133359 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7U30_RS10135 | 2128344..2130404 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| H7U30_RS10140 | 2130408..2131067 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H7U30_RS10145 | 2131146..2131376 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H7U30_RS10150 | 2131489..2131863 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| H7U30_RS10155 | 2131867..2132736 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| H7U30_RS10160 | 2132753..2133091 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2133214..2133359 | - | 146 | - | - | Antitoxin |
| - | 2133250..2133352 | + | 103 | - | - | Toxin |
| H7U30_RS10165 | 2133727..2133870 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| H7U30_RS10170 | 2133975..2134943 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| H7U30_RS10175 | 2135100..2135753 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| H7U30_RS10180 | 2135750..2135941 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H7U30_RS10185 | 2136039..2136278 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H7U30_RS10190 | 2136394..2137827 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T170214 NZ_CP060281:2133250-2133352 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170214 NZ_CP060281:c2133359-2133214 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
