Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1984071..1984211 | Replicon | chromosome |
| Accession | NZ_CP060276 | ||
| Organism | Serratia ureilytica strain CC119 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1984115..1984211 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1984071..1984211 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0895_RS09480 | 1979291..1979716 | + | 426 | WP_033652008.1 | RNA polymerase-binding protein DksA | - |
| D0895_RS09485 | 1979894..1980847 | + | 954 | WP_089192588.1 | prolyl aminopeptidase | - |
| D0895_RS09490 | 1980879..1981109 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| D0895_RS09495 | 1981450..1981968 | + | 519 | WP_033642716.1 | non-heme ferritin | - |
| D0895_RS09500 | 1982262..1982678 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| D0895_RS09505 | 1982681..1983562 | + | 882 | WP_187048804.1 | copper homeostasis membrane protein CopD | - |
| D0895_RS09510 | 1983632..1983973 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 1984071..1984211 | - | 141 | - | - | Antitoxin |
| - | 1984115..1984211 | + | 97 | - | - | Toxin |
| D0895_RS09515 | 1984462..1984866 | + | 405 | WP_187048805.1 | hypothetical protein | - |
| D0895_RS09520 | 1984863..1985081 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| D0895_RS09525 | 1985156..1985500 | - | 345 | WP_033642719.1 | hypothetical protein | - |
| D0895_RS09530 | 1985749..1986099 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| D0895_RS09535 | 1986150..1986452 | - | 303 | WP_042784229.1 | hypothetical protein | - |
| D0895_RS09540 | 1986452..1987228 | - | 777 | WP_183907048.1 | DUF4225 domain-containing protein | - |
| D0895_RS09545 | 1987505..1988704 | + | 1200 | WP_033642722.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T170178 NZ_CP060276:1984115-1984211 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT170178 NZ_CP060276:c1984211-1984071 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
