Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2280525..2280607 | Replicon | chromosome |
| Accession | NZ_CP060263 | ||
| Organism | Dickeya zeae strain JZL7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2280527..2280607 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2280525..2280607 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7F34_RS10235 | 2275922..2276566 | - | 645 | WP_168362560.1 | amino acid ABC transporter permease | - |
| H7F34_RS10240 | 2276563..2277303 | - | 741 | WP_219953305.1 | amino acid ABC transporter permease | - |
| H7F34_RS10245 | 2277353..2278189 | - | 837 | WP_219953306.1 | transporter substrate-binding domain-containing protein | - |
| H7F34_RS10250 | 2278328..2278720 | - | 393 | WP_219953307.1 | RidA family protein | - |
| H7F34_RS10255 | 2279124..2279876 | + | 753 | WP_038914011.1 | IclR family transcriptional regulator | - |
| H7F34_RS10260 | 2280147..2280374 | - | 228 | WP_168362557.1 | hypothetical protein | - |
| - | 2280525..2280607 | + | 83 | - | - | Antitoxin |
| - | 2280527..2280607 | - | 81 | - | - | Toxin |
| H7F34_RS10265 | 2280777..2281115 | - | 339 | WP_168362556.1 | YebY family protein | - |
| H7F34_RS10270 | 2281411..2281806 | + | 396 | WP_219953308.1 | hypothetical protein | - |
| H7F34_RS10275 | 2281900..2283177 | - | 1278 | WP_033581676.1 | YeaH/YhbH family protein | - |
| H7F34_RS10280 | 2283214..2285148 | - | 1935 | WP_012884836.1 | protein kinase YeaG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T170145 NZ_CP060263:c2280607-2280527 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT170145 NZ_CP060263:2280525-2280607 [Dickeya zeae]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
