Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1837956..1838227 | Replicon | chromosome |
| Accession | NZ_CP060121 | ||
| Organism | Escherichia coli BL21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1837994..1838097 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1837956..1838227 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FFHJCLDM_RS09095 | 1835113..1836552 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FFHJCLDM_RS09100 | 1836670..1836906 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FFHJCLDM_RS09105 | 1837011..1837202 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FFHJCLDM_RS09110 | 1837203..1837859 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1837956..1838227 | + | 272 | - | - | Antitoxin |
| - | 1837994..1838097 | - | 104 | - | - | Toxin |
| FFHJCLDM_RS09115 | 1838254..1838595 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FFHJCLDM_RS09120 | 1838608..1839480 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| FFHJCLDM_RS09125 | 1839484..1839858 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FFHJCLDM_RS09130 | 1839997..1840227 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FFHJCLDM_RS09135 | 1840329..1840985 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| FFHJCLDM_RS09140 | 1841009..1841671 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170010 NZ_CP060121:c1838097-1837994 [Escherichia coli BL21]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT170010 NZ_CP060121:1837956-1838227 [Escherichia coli BL21]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
