Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3686964..3687501 Replicon chromosome
Accession NZ_CP060084
Organism Teredinibacter haidensis strain Bs08

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag H5715_RS14815 Protein ID WP_075184999.1
Coordinates 3687202..3687501 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag H5715_RS14810 Protein ID WP_075185000.1
Coordinates 3686964..3687212 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H5715_RS14800 3685043..3685345 - 303 WP_075186657.1 hypothetical protein -
H5715_RS14805 3685716..3685928 - 213 WP_075186132.1 hypothetical protein -
H5715_RS14810 3686964..3687212 + 249 WP_075185000.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
H5715_RS14815 3687202..3687501 + 300 WP_075184999.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H5715_RS14820 3687601..3687948 - 348 WP_175574239.1 energy transducer TonB -
H5715_RS14825 3688127..3688399 + 273 WP_075184721.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
H5715_RS14830 3688380..3688649 + 270 WP_075184719.1 Txe/YoeB family addiction module toxin -
H5715_RS14835 3688775..3689398 - 624 WP_139309728.1 hypothetical protein -
H5715_RS14840 3689901..3690164 - 264 Protein_2926 hypothetical protein -
H5715_RS14845 3690282..3690581 - 300 WP_075186666.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3651850..3700864 49014
- inside Integron - - 3652388..3700962 48574


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11285.11 Da        Isoelectric Point: 10.5401

>T169934 WP_075184999.1 NZ_CP060084:3687202-3687501 [Teredinibacter haidensis]
MSYSLEFKKSALKEWKKLAPSIRQVFKKKLTERLENPHVLSAAVSGGNNLYKIKLRQLGYRLVYSVSDTTITVTVLAAGK
RNRNEVYDLALSRDDPDKL

Download         Length: 300 bp

>T169934 NZ_CP076740:3579-3866 [Acinetobacter baumannii]
ATGGAACAGTATTTTGAATGGGATGAGGCTAAGAATCGAAAGAATCAGAAAAAGCATGATATCTCTTTCGAAACTGCAAG
CCTTGTTTTTGAAGATCCATTACGGATCTCAATCCAAGACAGACATACCAATGGTGAAGAACGTTGGCAAACCATTGGAC
GAGTTAAAGGCGTACTAATGTTATTGGTGGCTCACACCATTTTTGATGAAGATGACTGTGAAATCATCCGAATCATTAGT
GCAAGGCAAGTCACTAAAGCGGAGCGAAACAAATATGAGCATGGTTAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9114.62 Da        Isoelectric Point: 4.2346

>AT169934 WP_075185000.1 NZ_CP060084:3686964-3687212 [Teredinibacter haidensis]
MPNQILTEMAASISELKANPMKVVASGEGMPIAVLNRNEPAFYCIPAKAYEAMMDLIEDKDLLEVARSRMDEESVKVKLD
EL

Download         Length: 249 bp

>AT169934 NZ_CP076740:3853-4167 [Acinetobacter baumannii]
ATGAGCATGGTTAGATACTCACACAAAGAGCTGAATGAGAAATTTGGTGAGAAGCAAGATGCTGAAATTCAACGCTTGCT
TGCTAAAGGCACGGTTCCTGATGATCAGCTAGATCTATCAGATATTCCTGAAATTACAGACTGGAGCAATGCTGTACGCC
AAAATCAATTTTACCGCCCAGTAAAGCAACAAACTTCAATTCGGTTAGATGCTGATGTACTTGCTTGGTTCAAAGCACAA
GGCAAAGGTTATCAAACACGTATGAATGAAATTTTACGAGATGCTATGCTAAAAGAATTAAAAAATCATCAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References