Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3681060..3681597 Replicon chromosome
Accession NZ_CP060084
Organism Teredinibacter haidensis strain Bs08

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag H5715_RS14790 Protein ID WP_185906548.1
Coordinates 3681298..3681597 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag H5715_RS14785 Protein ID WP_075185000.1
Coordinates 3681060..3681308 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H5715_RS14765 3676761..3677246 - 486 WP_075184544.1 GNAT family N-acetyltransferase -
H5715_RS14770 3677359..3677583 - 225 WP_075184545.1 hypothetical protein -
H5715_RS14775 3679378..3679710 - 333 WP_075186517.1 hypothetical protein -
H5715_RS14780 3679798..3680454 - 657 WP_083608101.1 DUF4145 domain-containing protein -
H5715_RS14785 3681060..3681308 + 249 WP_075185000.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
H5715_RS14790 3681298..3681597 + 300 WP_185906548.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H5715_RS14795 3681664..3681966 - 303 WP_075186935.1 hypothetical protein -
H5715_RS14800 3685043..3685345 - 303 WP_075186657.1 hypothetical protein -
H5715_RS14805 3685716..3685928 - 213 WP_075186132.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3651850..3700864 49014
- inside Integron - - 3652388..3700962 48574


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11270.09 Da        Isoelectric Point: 10.4608

>T169933 WP_185906548.1 NZ_CP060084:3681298-3681597 [Teredinibacter haidensis]
MSYSLEFKKSALKEWIKLAPSIRQVFKKKLTERLENPHVLSAAVSGGNNLYKIKLRQLGYRLVYSVSDTTITVTVLAAGK
RNRNEVYDLALSRDDPDKL

Download         Length: 300 bp

>T169933 NZ_CP076739:c3537394-3537005 [Acinetobacter baumannii]
TTGATCAACCATTTGAATTTTAAGCTGAAATATAGTCGTTTTTCGATTATATTTCAGTTTTTTATTGGCTTAAGCTTAGC
AGTTCTATTTTATCAATTAATGCCGTTACTATGGTGGTTAGTTGTAATCAGCTTACTATTTATCAGCTTTATTTTCTTTT
TAAAGCGTCCGCAGCTTGCACAAATTGCTTATTTAGATAAAAAACTATGGTCGCTTGCTTATAAGTCACAGAACACCGTT
TCTCGCGTCAAAATTTTAAAAATAATTGATTGTCAGATTTTCATAGTGATCTATTTTGAAGGTCATAAAACACTAACTTC
TATCATTTGGTTTGATCAAATGTCATTAGCAGAGTGGAAAAAGCTTAAAACTTTAGAAAAACTCTATTAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9114.62 Da        Isoelectric Point: 4.2346

>AT169933 WP_075185000.1 NZ_CP060084:3681060-3681308 [Teredinibacter haidensis]
MPNQILTEMAASISELKANPMKVVASGEGMPIAVLNRNEPAFYCIPAKAYEAMMDLIEDKDLLEVARSRMDEESVKVKLD
EL

Download         Length: 249 bp

>AT169933 NZ_CP076739:c3537658-3537401 [Acinetobacter baumannii]
ATGTCTGAAGAAATGACCTTGGAAGAACGTAAAGTAATCTATCGCGCACGTCGTGGTTTAAAGGAAATTGATGTCTATTT
TGACCCTTATGTGAAAAATTATTATTTAAAGGCAGACCCGGCAGAAAAAGCGTTGTTTGCTGAGTTGGTAGAACAGGAAG
ACCCTGATTTACTAGATTGGTTTATGGAAGTATCAGAACCACCACGTACCGAATTACGTGACTTTATCTATAAATTAAAA
CACTATGTTCATGGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References