Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2239921..2240192 | Replicon | chromosome |
| Accession | NZ_CP060083 | ||
| Organism | Escherichia coli strain G1/2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2240051..2240154 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2239921..2240192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4P46_RS10795 | 2236476..2237138 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H4P46_RS10800 | 2237162..2237818 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H4P46_RS10805 | 2237920..2238150 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4P46_RS10810 | 2238289..2238663 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H4P46_RS10815 | 2238667..2239539 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H4P46_RS10820 | 2239552..2239893 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2239921..2240192 | - | 272 | - | - | Antitoxin |
| - | 2240051..2240154 | + | 104 | - | - | Toxin |
| H4P46_RS10825 | 2240289..2240945 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H4P46_RS10830 | 2240946..2241137 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H4P46_RS10835 | 2241242..2241478 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H4P46_RS10840 | 2241596..2243035 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2155853..2256032 | 100179 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169914 NZ_CP060083:2240051-2240154 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169914 NZ_CP060083:c2240192-2239921 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
