Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2107372..2107643 | Replicon | chromosome |
| Accession | NZ_CP060075 | ||
| Organism | Escherichia coli strain G3/10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2107502..2107605 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2107372..2107643 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4P47_RS10210 | 2103927..2104589 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H4P47_RS10215 | 2104613..2105269 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| H4P47_RS10220 | 2105371..2105601 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4P47_RS10225 | 2105740..2106114 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| H4P47_RS10230 | 2106118..2106990 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| H4P47_RS10235 | 2107003..2107344 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2107372..2107643 | - | 272 | - | - | Antitoxin |
| - | 2107502..2107605 | + | 104 | - | - | Toxin |
| H4P47_RS10240 | 2107740..2108396 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| H4P47_RS10245 | 2108397..2108588 | - | 192 | WP_001338167.1 | YebW family protein | - |
| H4P47_RS10250 | 2108693..2108929 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| H4P47_RS10255 | 2109047..2110486 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169889 NZ_CP060075:2107502-2107605 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCTTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCTTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169889 NZ_CP060075:c2107643-2107372 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAAGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAAGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
