Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949662..1949933 | Replicon | chromosome |
| Accession | NZ_CP060073 | ||
| Organism | Escherichia coli strain G4/9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949792..1949895 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949662..1949933 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4P48_RS09185 | 1946217..1946879 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| H4P48_RS09190 | 1946903..1947559 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H4P48_RS09195 | 1947661..1947891 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4P48_RS09200 | 1948030..1948404 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H4P48_RS09205 | 1948408..1949280 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H4P48_RS09210 | 1949293..1949634 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1949662..1949933 | - | 272 | - | - | Antitoxin |
| - | 1949792..1949895 | + | 104 | - | - | Toxin |
| H4P48_RS09215 | 1950030..1950686 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| H4P48_RS09220 | 1950687..1950878 | - | 192 | WP_001338167.1 | YebW family protein | - |
| H4P48_RS09225 | 1950983..1951219 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| H4P48_RS09230 | 1951337..1952776 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169866 NZ_CP060073:1949792-1949895 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169866 NZ_CP060073:c1949933-1949662 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
