Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2504651..2504922 | Replicon | chromosome |
| Accession | NZ_CP060061 | ||
| Organism | Escherichia coli strain G6/7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2504689..2504792 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2504651..2504922 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4P50_RS12155 | 2501808..2503247 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H4P50_RS12160 | 2503365..2503601 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H4P50_RS12165 | 2503706..2503897 | + | 192 | WP_000457842.1 | YebW family protein | - |
| H4P50_RS12170 | 2503898..2504554 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2504651..2504922 | + | 272 | - | - | Antitoxin |
| - | 2504689..2504792 | - | 104 | - | - | Toxin |
| H4P50_RS12175 | 2504950..2505291 | - | 342 | WP_000976476.1 | YebY family protein | - |
| H4P50_RS12180 | 2505304..2506176 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H4P50_RS12185 | 2506180..2506554 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H4P50_RS12190 | 2506693..2506923 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4P50_RS12195 | 2507025..2507681 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H4P50_RS12200 | 2507705..2508367 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2488811..2589351 | 100540 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169817 NZ_CP060061:c2504792-2504689 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169817 NZ_CP060061:2504651-2504922 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
