Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2252724..2252995 | Replicon | chromosome |
| Accession | NZ_CP060057 | ||
| Organism | Escherichia coli strain G8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2252854..2252957 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2252724..2252995 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4P51_RS10855 | 2249279..2249941 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H4P51_RS10860 | 2249965..2250621 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H4P51_RS10865 | 2250723..2250953 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4P51_RS10870 | 2251092..2251466 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H4P51_RS10875 | 2251470..2252342 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H4P51_RS10880 | 2252355..2252696 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2252724..2252995 | - | 272 | - | - | Antitoxin |
| - | 2252854..2252957 | + | 104 | - | - | Toxin |
| H4P51_RS10885 | 2253092..2253748 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H4P51_RS10890 | 2253749..2253940 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H4P51_RS10895 | 2254045..2254281 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H4P51_RS10900 | 2254399..2255838 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169787 NZ_CP060057:2252854-2252957 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169787 NZ_CP060057:c2252995-2252724 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
