Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2277454..2277989 Replicon chromosome
Accession NZ_CP059958
Organism Pectobacterium brasiliense strain IPO:4065 NAK:223

Toxin (Protein)


Gene name relE Uniprot ID C6DJA0
Locus tag H5A29_RS10070 Protein ID WP_015842269.1
Coordinates 2277702..2277989 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q6DB37
Locus tag H5A29_RS10065 Protein ID WP_010281712.1
Coordinates 2277454..2277705 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H5A29_RS10035 2272892..2273218 + 327 WP_039510297.1 helix-turn-helix domain-containing protein -
H5A29_RS10040 2273203..2273517 + 315 WP_039279922.1 HipA N-terminal domain-containing protein -
H5A29_RS10045 2273514..2274554 + 1041 WP_119871557.1 HipA domain-containing protein -
H5A29_RS10050 2274614..2275237 - 624 WP_119871556.1 LysE family translocator -
H5A29_RS10055 2275505..2276260 + 756 WP_119871555.1 thiol:disulfide interchange protein DsbG -
H5A29_RS10060 2276294..2277199 - 906 WP_119871554.1 siderophore-interacting protein -
H5A29_RS10065 2277454..2277705 + 252 WP_010281712.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
H5A29_RS10070 2277702..2277989 + 288 WP_015842269.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H5A29_RS10075 2278107..2279459 - 1353 WP_119871553.1 glutathione-disulfide reductase -
H5A29_RS10080 2279588..2280430 - 843 WP_010281707.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
H5A29_RS10085 2280711..2281094 - 384 WP_014913665.1 TfoX/Sxy family protein -
H5A29_RS10090 2281216..2281776 - 561 Protein_1973 alkyl/aryl-sulfatase -
H5A29_RS10095 2281949..2282677 + 729 WP_039498362.1 DUF1266 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11074.15 Da        Isoelectric Point: 10.3527

>T169551 WP_015842269.1 NZ_CP059958:2277702-2277989 [Pectobacterium brasiliense]
MSYSVKFREDALKEWLKLDKTIQQQFAKKLKKCCENPHIPSAKLRGMKDCYKIKLRASGFRLVYEVIDDVLIIAVVAVGK
RERSGVYHLASERMR

Download         Length: 288 bp

>T169551 NZ_CP076591:c2000131-1999856 [Erwinia amylovora]
ATGGAAATACAGTGGACCCAAAAGGCCCAGGATGACCTGGAGCGTATTTATAGGTTTGCCTGTCAGTACAGTCGGCAACA
TGCTGACAACGTATTAGAGCGTTTGCTCATAGGAACCTCAGGGCTCGCCGACCATCCAAGAATCGGTGTTTCTCAGATAA
GATATGAACCACGAGAAGTGAGAAAAATCTTGTTTGATGATTATGACGTTCACTATGAAATTCAGCGCGACACTATCTAT
ATTGTTGACCTTTGGCATACCCGAGAGGATCGCTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9117.47 Da        Isoelectric Point: 4.0637

>AT169551 WP_010281712.1 NZ_CP059958:2277454-2277705 [Pectobacterium brasiliense]
MPNIILSDTSASVSELKKNPMATVNAGDGLPVAILNRNQPAFYCIPADLYEKMLDALDDQELVKLIGERKNQPLVDVDLD
SFL

Download         Length: 252 bp

>AT169551 NZ_CP076591:c2000383-2000135 [Erwinia amylovora]
ATGAGACAACTCGCGAAACAGACGATCAGCGCTCAGATCCCTGCAGAGCTTGCCGCGGCGGTTGAAAACCTGGCTATTGA
ACTGGACAGATCTAAAAGCTGGGTGATTAAAGAAGCGCTGACCGCCATGATTGAAGAGAGAGAGCGGCGGCATCAGCAGA
TTTTGAAAGGGCTTGCTGATGTCGATGCGGGAAGAGTGGTTAGCCATGCGGATGTAGTTGACTTCGCTAACAAACTGAAA
AAATCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3S0XQ75

Antitoxin

Source ID Structure
AlphaFold DB A0A0M2EZP0

References