Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4407908..4408179 | Replicon | chromosome |
| Accession | NZ_CP059929 | ||
| Organism | Escherichia coli strain 162.2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4408038..4408141 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4407908..4408179 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5C75_RS21375 | 4404463..4405125 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H5C75_RS21380 | 4405149..4405805 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H5C75_RS21385 | 4405907..4406137 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H5C75_RS21390 | 4406276..4406650 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H5C75_RS21395 | 4406654..4407526 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| H5C75_RS21400 | 4407539..4407880 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4407908..4408179 | - | 272 | - | - | Antitoxin |
| - | 4408038..4408141 | + | 104 | - | - | Toxin |
| H5C75_RS21405 | 4408276..4408932 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| H5C75_RS21410 | 4408933..4409124 | - | 192 | WP_001338167.1 | YebW family protein | - |
| H5C75_RS21415 | 4409229..4409465 | - | 237 | WP_001338166.1 | YebV family protein | - |
| H5C75_RS21420 | 4409583..4411022 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169446 NZ_CP059929:4408038-4408141 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169446 NZ_CP059929:c4408179-4407908 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGTTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGTTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
