Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2718726..2718994 Replicon chromosome
Accession NZ_CP059917
Organism Escherichia coli strain 64.1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2718764..2718866 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2718726..2718994 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H5C78_RS13185 2715883..2717322 + 1440 WP_001317885.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
H5C78_RS13190 2717440..2717676 + 237 WP_001295499.1 DUF1480 family protein -
H5C78_RS13195 2717781..2717972 + 192 WP_001317886.1 YebW family protein -
H5C78_RS13200 2717973..2718629 - 657 WP_000812744.1 protein-serine/threonine phosphatase -
- 2718726..2718994 + 269 - - Antitoxin
- 2718764..2718866 - 103 - - Toxin
H5C78_RS13205 2719024..2719365 - 342 WP_000976472.1 YebY family protein -
H5C78_RS13210 2719378..2720250 - 873 WP_000879316.1 copper homeostasis membrane protein CopD -
H5C78_RS13215 2720254..2720628 - 375 WP_000168747.1 CopC domain-containing protein YobA -
H5C78_RS13220 2720767..2720997 + 231 WP_000916759.1 DNA polymerase III subunit theta -
H5C78_RS13225 2721099..2721755 + 657 WP_000011673.1 carbon-nitrogen hydrolase family protein -
H5C78_RS13230 2721779..2722441 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T169395 NZ_CP059917:c2718866-2718764 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT169395 NZ_CP059917:2718726-2718994 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References