Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2140270..2140538 | Replicon | chromosome |
| Accession | NZ_CP059840 | ||
| Organism | Escherichia coli strain E2348/69 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2140398..2140500 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2140270..2140538 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4J01_RS10600 | 2136823..2137485 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| H4J01_RS10605 | 2137509..2138165 | - | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein | - |
| H4J01_RS10610 | 2138267..2138497 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4J01_RS10615 | 2138636..2139010 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| H4J01_RS10620 | 2139014..2139886 | + | 873 | WP_000879263.1 | copper homeostasis membrane protein CopD | - |
| H4J01_RS10625 | 2139899..2140240 | + | 342 | WP_000976470.1 | YebY family protein | - |
| - | 2140270..2140538 | - | 269 | - | - | Antitoxin |
| - | 2140398..2140500 | + | 103 | - | - | Toxin |
| H4J01_RS10630 | 2140635..2141291 | + | 657 | WP_000812706.1 | protein-serine/threonine phosphatase | - |
| H4J01_RS10635 | 2141292..2141483 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H4J01_RS10640 | 2141588..2141824 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H4J01_RS10645 | 2141942..2143381 | - | 1440 | WP_001339709.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T169230 NZ_CP059840:2140398-2140500 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT169230 NZ_CP059840:c2140538-2140270 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
