Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 603221..603492 | Replicon | chromosome |
| Accession | NZ_CP059835 | ||
| Organism | Escherichia coli strain tcmA_3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 603259..603362 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 603221..603492 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQF93_RS02910 | 600378..601817 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GQF93_RS02915 | 601935..602171 | + | 237 | WP_001295499.1 | YebV family protein | - |
| GQF93_RS02920 | 602276..602467 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GQF93_RS02925 | 602468..603124 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 603221..603492 | + | 272 | - | - | Antitoxin |
| - | 603259..603362 | - | 104 | - | - | Toxin |
| GQF93_RS02930 | 603520..603861 | - | 342 | WP_000976492.1 | YebY family protein | - |
| GQF93_RS02935 | 603874..604746 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GQF93_RS02940 | 604750..605124 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GQF93_RS02945 | 605263..605493 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GQF93_RS02950 | 605595..606251 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| GQF93_RS02955 | 606275..606937 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169184 NZ_CP059835:c603362-603259 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169184 NZ_CP059835:603221-603492 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
