Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1003196..1003467 | Replicon | chromosome |
| Accession | NZ_CP059723 | ||
| Organism | Escherichia coli strain BUCT2930 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1003234..1003337 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1003196..1003467 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1R14_RS06660 | 1000353..1001792 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1R14_RS06665 | 1001910..1002146 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| H1R14_RS06670 | 1002251..1002442 | + | 192 | WP_001338167.1 | YebW family protein | - |
| H1R14_RS06675 | 1002443..1003099 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 1003196..1003467 | + | 272 | - | - | Antitoxin |
| - | 1003234..1003337 | - | 104 | - | - | Toxin |
| H1R14_RS06680 | 1003495..1003836 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H1R14_RS06685 | 1003849..1004721 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H1R14_RS06690 | 1004725..1005099 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H1R14_RS06695 | 1005238..1005468 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1R14_RS06700 | 1005570..1006226 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H1R14_RS06705 | 1006250..1006912 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169091 NZ_CP059723:c1003337-1003234 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169091 NZ_CP059723:1003196-1003467 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
