Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2768478..2768679 | Replicon | chromosome |
| Accession | NZ_CP059711 | ||
| Organism | Enterobacter hormaechei strain ZHH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2768483..2768586 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2768478..2768679 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H2678_RS13325 | 2764725..2766188 | + | 1464 | WP_038416257.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H2678_RS13330 | 2766293..2766532 | + | 240 | WP_006811010.1 | YebV family protein | - |
| H2678_RS13335 | 2766567..2767211 | - | 645 | WP_094948314.1 | protein-serine/threonine phosphatase | - |
| H2678_RS13340 | 2767379..2768359 | + | 981 | WP_038416259.1 | VirK/YbjX family protein | - |
| H2678_RS13345 | 2768405..2768602 | + | 198 | WP_071881497.1 | hypothetical protein | - |
| - | 2768478..2768679 | + | 202 | - | - | Antitoxin |
| - | 2768483..2768586 | - | 104 | - | - | Toxin |
| H2678_RS13350 | 2768728..2769066 | - | 339 | WP_022648464.1 | YebY family protein | - |
| H2678_RS13355 | 2769083..2769952 | - | 870 | WP_038416260.1 | copper homeostasis membrane protein CopD | - |
| H2678_RS13360 | 2769954..2770325 | - | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| H2678_RS13365 | 2770463..2770693 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| H2678_RS13370 | 2770805..2771443 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| H2678_RS13375 | 2771468..2772130 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169070 NZ_CP059711:c2768586-2768483 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT169070 NZ_CP059711:2768478-2768679 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
