169032

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 1177246..1178966 Replicon chromosome
Accession NZ_CP059588
Organism Xanthomonas oryzae pv. oryzae strain IXO651

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag IXO651_RS05510 Protein ID WP_075244498.1
Coordinates 1178313..1178966 (-) Length 218 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag IXO651_RS05505 Protein ID WP_075244497.1
Coordinates 1177246..1178316 (-) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IXO651_RS05490 (IXO651_005455) 1173402..1175003 - 1602 WP_011407751.1 rhamnogalacturonan lyase B N-terminal domain-containing protein -
IXO651_RS05495 (IXO651_005460) 1175364..1175690 - 327 Protein_1051 hypothetical protein -
IXO651_RS05500 (IXO651_005465) 1175992..1177208 + 1217 Protein_1052 ISL3 family transposase -
IXO651_RS05505 (IXO651_005470) 1177246..1178316 - 1071 WP_075244497.1 macro domain-containing protein Antitoxin
IXO651_RS05510 (IXO651_005475) 1178313..1178966 - 654 WP_075244498.1 DUF4433 domain-containing protein Toxin
IXO651_RS05515 (IXO651_005480) 1179298..1180224 - 927 WP_011257932.1 Grx4 family monothiol glutaredoxin -
IXO651_RS05520 (IXO651_005485) 1180270..1181061 + 792 WP_171970779.1 polysaccharide deacetylase family protein -
IXO651_RS05530 (IXO651_005495) 1181363..1182034 - 672 WP_011407759.1 class I SAM-dependent methyltransferase -
IXO651_RS05535 (IXO651_005500) 1182357..1182995 - 639 WP_011407760.1 SGNH/GDSL hydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 218 a.a.        Molecular weight: 25229.65 Da        Isoelectric Point: 8.3240

>T169032 WP_075244498.1 NZ_CP059588:c1178966-1178313 [Xanthomonas oryzae pv. oryzae]
MAEHYSKLNPKNALIWRITHRGNLPWILDNGLHCGNAAVQSSSWVSIGNPELIDKRSSHAVPRPPGGFLNDYVPFYFTPF
SPMLHNIHTGWRGIPRRPNEDIVILVSSLHHVAERRWPFLFTDSHASCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDP
AKFERYQAEALIHRHLPLDGLRGIVCHTDGLKQTIERQLQERNLKLPVHTRTDWYFR

Download         Length: 654 bp

>T169032 NZ_CP076272:c1349950-1349843 [Escherichia coli]
ATGACGCTCGCGCAGTTTACCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 39942.02 Da        Isoelectric Point: 6.0080

>AT169032 WP_075244497.1 NZ_CP059588:c1178316-1177246 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHLFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECGLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVREGISAQVADVREGIR
HWPGGQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1071 bp

>AT169032 NZ_CP076272:1349997-1350063 [Escherichia coli]
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References