Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
| Location | 2159194..2159750 | Replicon | chromosome |
| Accession | NZ_CP059587 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain IXO644 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | IXO644_RS10175 | Protein ID | WP_229001948.1 |
| Coordinates | 2159499..2159750 (+) | Length | 84 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A854CIX2 |
| Locus tag | IXO644_RS10170 | Protein ID | WP_011408759.1 |
| Coordinates | 2159194..2159472 (+) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IXO644_RS10155 (IXO644_010185) | 2155378..2156613 | + | 1236 | WP_011257570.1 | ISL3-like element ISXoo13 family transposase | - |
| IXO644_RS10160 (IXO644_010190) | 2156942..2158177 | - | 1236 | WP_011257310.1 | ISL3-like element ISXoo13 family transposase | - |
| IXO644_RS10165 (IXO644_010200) | 2158654..2158998 | + | 345 | WP_199285675.1 | hypothetical protein | - |
| IXO644_RS10170 (IXO644_010205) | 2159194..2159472 | + | 279 | WP_011408759.1 | CopG family ribbon-helix-helix protein | Antitoxin |
| IXO644_RS10175 (IXO644_010210) | 2159499..2159750 | + | 252 | WP_229001948.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| IXO644_RS10180 (IXO644_010215) | 2159827..2160081 | + | 255 | WP_198912806.1 | hypothetical protein | - |
| IXO644_RS10185 | 2160074..2160208 | + | 135 | WP_011051575.1 | hypothetical protein | - |
| IXO644_RS10190 (IXO644_010220) | 2160277..2160531 | + | 255 | WP_223293127.1 | hypothetical protein | - |
| IXO644_RS10195 | 2160748..2160867 | + | 120 | Protein_1956 | IS3 family transposase | - |
| IXO644_RS10205 (IXO644_010235) | 2161395..2161796 | - | 402 | WP_011259345.1 | H-NS family nucleoid-associated regulatory protein | - |
| IXO644_RS10210 (IXO644_010240) | 2162018..2162194 | + | 177 | Protein_1958 | DUF3606 domain-containing protein | - |
| IXO644_RS10215 (IXO644_010250) | 2162476..2162813 | + | 338 | Protein_1959 | ATP-dependent DNA ligase | - |
| IXO644_RS10220 (IXO644_010255) | 2162889..2163980 | - | 1092 | WP_075247511.1 | ribonuclease D | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 9603.92 Da Isoelectric Point: 9.9718
>T169028 WP_229001948.1 NZ_CP059587:2159499-2159750 [Xanthomonas oryzae pv. oryzae]
MLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDGDTVTILAVRHQKE
AGY
MLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDGDTVTILAVRHQKE
AGY
Download Length: 252 bp
>T169028 NZ_CP076272:c513648-513106 [Escherichia coli]
ATGGTCGACAAGCATGAAGAGATTACTCTGCCCATAGTCCTCTCCTGTAATTATCAGTCTGATATTACTTATCCTGGGCA
AAAACAGTTTGATTGCGGTAACCCTGTTATCGATAAATTTGTACGCGCATCGCTAAAGAAAAGTGTGCGTAATAGCGACT
GTGCGGCTAAAGCACTTATTGACAGACAAAGTGGTGAACTGATCGGCATCTGTACTTTTACGGCATATTCGCTGGAAAAA
CAACGCGTTTCTGGCGTCCTTCAGGGTTCACAACCTTCAGAAATTGGTGTTGTCAGATTAGTCATGTTGGGGGTAGCACG
GAAGTATCAAAAGCGGGGCTTTGGTCAGGACCTACTATGTGATTTTTTTGAACATGTAAAAATAATTCACCAGGCATTAC
CAATTAAAGGGGTTTATCTTGATGCTGACCCTGCCGCCATTAATTTTTATGCTCGTCTCGGCTTTGTTCAGCTTTCAGCG
ACACCAAATGCTTTTGGTGCTGTACCTATGTTTTTGGCGATTCAGCATATTCTCGCGGCTTAG
ATGGTCGACAAGCATGAAGAGATTACTCTGCCCATAGTCCTCTCCTGTAATTATCAGTCTGATATTACTTATCCTGGGCA
AAAACAGTTTGATTGCGGTAACCCTGTTATCGATAAATTTGTACGCGCATCGCTAAAGAAAAGTGTGCGTAATAGCGACT
GTGCGGCTAAAGCACTTATTGACAGACAAAGTGGTGAACTGATCGGCATCTGTACTTTTACGGCATATTCGCTGGAAAAA
CAACGCGTTTCTGGCGTCCTTCAGGGTTCACAACCTTCAGAAATTGGTGTTGTCAGATTAGTCATGTTGGGGGTAGCACG
GAAGTATCAAAAGCGGGGCTTTGGTCAGGACCTACTATGTGATTTTTTTGAACATGTAAAAATAATTCACCAGGCATTAC
CAATTAAAGGGGTTTATCTTGATGCTGACCCTGCCGCCATTAATTTTTATGCTCGTCTCGGCTTTGTTCAGCTTTCAGCG
ACACCAAATGCTTTTGGTGCTGTACCTATGTTTTTGGCGATTCAGCATATTCTCGCGGCTTAG
Antitoxin
Download Length: 93 a.a. Molecular weight: 10826.11 Da Isoelectric Point: 4.9736
>AT169028 WP_011408759.1 NZ_CP059587:2159194-2159472 [Xanthomonas oryzae pv. oryzae]
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK
Download Length: 279 bp
>AT169028 NZ_CP076272:c513943-513632 [Escherichia coli]
ATGCCTGGAAAAACAGCCACTCTACCCGATGTCGATAAAACGCTGAAAAATGCGCGGGTCGAACTCAAAACTAGTCCCGA
CGCCAAAAACAAACTTCGTGAAGCTGCGCAAGCCGTTGGGGTAGATTTAAGCGCTTTTATTTTGAGCGCTGCTATGGAAC
GCGCCGAAAGTGTGCTTGATAACCAACGTCGCCGTGAGCTTTCGAATCAAAGCTGGGAACTGATGAACCAACTCATCGCT
GAACCTGCTCAACCGACGCTCGCCCTCAAGGCGTTAATGAAAAGGAAAAACAGCGATGGTCGACAAGCATGA
ATGCCTGGAAAAACAGCCACTCTACCCGATGTCGATAAAACGCTGAAAAATGCGCGGGTCGAACTCAAAACTAGTCCCGA
CGCCAAAAACAAACTTCGTGAAGCTGCGCAAGCCGTTGGGGTAGATTTAAGCGCTTTTATTTTGAGCGCTGCTATGGAAC
GCGCCGAAAGTGTGCTTGATAACCAACGTCGCCGTGAGCTTTCGAATCAAAGCTGGGAACTGATGAACCAACTCATCGCT
GAACCTGCTCAACCGACGCTCGCCCTCAAGGCGTTAATGAAAAGGAAAAACAGCGATGGTCGACAAGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|