Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4068843..4068988 | Replicon | chromosome |
| Accession | NZ_CP059468 | ||
| Organism | Klebsiella pneumoniae strain BA25665 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4068850..4068952 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4068843..4068988 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBJ46_RS19620 | 4064374..4065807 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HBJ46_RS19625 | 4065923..4066162 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HBJ46_RS19630 | 4066260..4066451 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HBJ46_RS19635 | 4066448..4067101 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HBJ46_RS19640 | 4067258..4068226 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HBJ46_RS19645 | 4068331..4068474 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4068843..4068988 | + | 146 | - | - | Antitoxin |
| - | 4068850..4068952 | - | 103 | - | - | Toxin |
| HBJ46_RS19650 | 4069111..4069449 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HBJ46_RS19655 | 4069466..4070335 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HBJ46_RS19660 | 4070339..4070713 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HBJ46_RS19665 | 4070826..4071056 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HBJ46_RS19670 | 4071135..4071794 | + | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| HBJ46_RS19675 | 4071798..4073858 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4061617..4142043 | 80426 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168881 NZ_CP059468:c4068952-4068850 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT168881 NZ_CP059468:4068843-4068988 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
