Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2010105..2010314 | Replicon | chromosome |
| Accession | NZ_CP059422 | ||
| Organism | Enterobacter hormaechei strain ENCL49790 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2010198..2010301 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2010105..2010314 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1Z82_RS09645 | 2006642..2007304 | - | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
| H1Z82_RS09650 | 2007329..2007979 | - | 651 | WP_045142109.1 | carbon-nitrogen hydrolase family protein | - |
| H1Z82_RS09655 | 2008091..2008321 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| H1Z82_RS09660 | 2008459..2008830 | + | 372 | WP_045142108.1 | CopC domain-containing protein YobA | - |
| H1Z82_RS09665 | 2008832..2009701 | + | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| H1Z82_RS09670 | 2009718..2010056 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2010105..2010314 | - | 210 | - | - | Antitoxin |
| H1Z82_RS09675 | 2010182..2010379 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2010198..2010301 | + | 104 | - | - | Toxin |
| H1Z82_RS09680 | 2010425..2011405 | - | 981 | WP_045142106.1 | VirK/YbjX family protein | - |
| H1Z82_RS09685 | 2011573..2012217 | + | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| H1Z82_RS09690 | 2012252..2012491 | - | 240 | WP_003859885.1 | YebV family protein | - |
| H1Z82_RS09695 | 2012598..2014046 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168829 NZ_CP059422:2010198-2010301 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT168829 NZ_CP059422:c2010314-2010105 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
