Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2858718..2858927 | Replicon | chromosome |
| Accession | NZ_CP059414 | ||
| Organism | Enterobacter hormaechei strain ENCL48212 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2858731..2858834 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2858718..2858927 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D56_RS15540 | 2854986..2856434 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1D56_RS15545 | 2856541..2856780 | + | 240 | WP_003859885.1 | YebV family protein | - |
| H1D56_RS15550 | 2856815..2857459 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| H1D56_RS15555 | 2857627..2858607 | + | 981 | WP_045142106.1 | VirK/YbjX family protein | - |
| H1D56_RS15560 | 2858653..2858850 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2858718..2858927 | + | 210 | - | - | Antitoxin |
| - | 2858731..2858834 | - | 104 | - | - | Toxin |
| H1D56_RS15565 | 2858976..2859314 | - | 339 | WP_003859787.1 | YebY family protein | - |
| H1D56_RS15570 | 2859331..2860200 | - | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| H1D56_RS15575 | 2860202..2860573 | - | 372 | WP_045142108.1 | CopC domain-containing protein YobA | - |
| H1D56_RS15580 | 2860711..2860941 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| H1D56_RS15585 | 2861053..2861703 | + | 651 | WP_045142109.1 | carbon-nitrogen hydrolase family protein | - |
| H1D56_RS15590 | 2861728..2862390 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168792 NZ_CP059414:c2858834-2858731 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT168792 NZ_CP059414:2858718-2858927 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
