Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1963680..1963820 | Replicon | chromosome |
| Accession | NZ_CP059391 | ||
| Organism | Klebsiella africana strain FF1003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1963716..1963818 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1963680..1963820 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1X61_RS09445 | 1958811..1960871 | + | 2061 | WP_136030185.1 | oligopeptidase B | - |
| H1X61_RS09450 | 1960875..1961534 | - | 660 | WP_136030187.1 | exodeoxyribonuclease X | - |
| H1X61_RS09455 | 1961613..1961843 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H1X61_RS09460 | 1961957..1962331 | + | 375 | WP_203033985.1 | CopC domain-containing protein YobA | - |
| H1X61_RS09465 | 1962333..1963202 | + | 870 | WP_203033986.1 | copper homeostasis membrane protein CopD | - |
| H1X61_RS09470 | 1963219..1963557 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1963680..1963820 | - | 141 | - | - | Antitoxin |
| - | 1963716..1963818 | + | 103 | - | - | Toxin |
| H1X61_RS09475 | 1964187..1965149 | - | 963 | WP_025711084.1 | glycosyltransferase | - |
| H1X61_RS09480 | 1965424..1966557 | - | 1134 | Protein_1850 | IS3 family transposase | - |
| H1X61_RS09485 | 1966777..1966920 | - | 144 | WP_168435244.1 | Ecr family regulatory small membrane protein | - |
| H1X61_RS09490 | 1967025..1967993 | - | 969 | WP_203033987.1 | VirK/YbjX family protein | - |
| H1X61_RS09495 | 1968150..1968803 | + | 654 | WP_136030196.1 | protein-serine/threonine phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1943083..1983810 | 40727 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168762 NZ_CP059391:1963716-1963818 [Klebsiella africana]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT168762 NZ_CP059391:c1963820-1963680 [Klebsiella africana]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
