Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950446..1950591 | Replicon | chromosome |
| Accession | NZ_CP059317 | ||
| Organism | Klebsiella pneumoniae strain Kp46564 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950482..1950584 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950446..1950591 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D29_RS10945 | 1945576..1947636 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| H1D29_RS10950 | 1947640..1948299 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H1D29_RS10955 | 1948378..1948608 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H1D29_RS10960 | 1948721..1949095 | + | 375 | WP_060577972.1 | CopC domain-containing protein YobA | - |
| H1D29_RS10965 | 1949099..1949968 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| H1D29_RS10970 | 1949985..1950323 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1950446..1950591 | - | 146 | - | - | Antitoxin |
| - | 1950482..1950584 | + | 103 | - | - | Toxin |
| H1D29_RS10975 | 1950960..1951103 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| H1D29_RS10980 | 1951208..1952176 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| H1D29_RS10985 | 1952333..1952986 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| H1D29_RS10990 | 1952983..1953174 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H1D29_RS10995 | 1953272..1953511 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H1D29_RS11000 | 1953627..1955060 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168619 NZ_CP059317:1950482-1950584 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT168619 NZ_CP059317:c1950591-1950446 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
