Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1953955..1954100 | Replicon | chromosome |
| Accession | NZ_CP059312 | ||
| Organism | Klebsiella pneumoniae strain Kp46596 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1953991..1954093 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1953955..1954100 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D28_RS12190 | 1949085..1951145 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| H1D28_RS12195 | 1951149..1951808 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H1D28_RS12200 | 1951887..1952117 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H1D28_RS12205 | 1952230..1952604 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| H1D28_RS12210 | 1952608..1953477 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| H1D28_RS12215 | 1953494..1953832 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1953955..1954100 | - | 146 | - | - | Antitoxin |
| - | 1953991..1954093 | + | 103 | - | - | Toxin |
| H1D28_RS12220 | 1954469..1954612 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| H1D28_RS12225 | 1954717..1955685 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| H1D28_RS12230 | 1955842..1956495 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| H1D28_RS12235 | 1956492..1956683 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H1D28_RS12240 | 1956781..1957020 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H1D28_RS12245 | 1957136..1958569 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168599 NZ_CP059312:1953991-1954093 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT168599 NZ_CP059312:c1954100-1953955 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
