Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3362993..3363138 | Replicon | chromosome |
| Accession | NZ_CP059295 | ||
| Organism | Klebsiella pneumoniae strain ER17974.3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3363029..3363131 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3362993..3363138 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0490_RS15875 | 3358123..3360183 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| H0490_RS15880 | 3360187..3360846 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H0490_RS15885 | 3360925..3361155 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H0490_RS15890 | 3361268..3361642 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| H0490_RS15895 | 3361646..3362515 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| H0490_RS15900 | 3362532..3362870 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3362993..3363138 | - | 146 | - | - | Antitoxin |
| - | 3363029..3363131 | + | 103 | - | - | Toxin |
| H0490_RS15905 | 3363506..3363649 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| H0490_RS15910 | 3363754..3364722 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| H0490_RS15915 | 3364879..3365532 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| H0490_RS15920 | 3365529..3365720 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H0490_RS15925 | 3365818..3366057 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H0490_RS15930 | 3366173..3367606 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168554 NZ_CP059295:3363029-3363131 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT168554 NZ_CP059295:c3363138-3362993 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
