Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1981461..1981699 | Replicon | chromosome |
| Accession | NZ_CP059288 | ||
| Organism | Escherichia coli strain 1506 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1981591..1981694 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1981461..1981699 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0481_RS09540 | 1978016..1978678 | - | 663 | WP_181464077.1 | exodeoxyribonuclease X | - |
| H0481_RS09545 | 1978702..1979358 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H0481_RS09550 | 1979460..1979690 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H0481_RS09555 | 1979829..1980203 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H0481_RS09560 | 1980207..1981079 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H0481_RS09565 | 1981092..1981433 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1981461..1981699 | - | 239 | - | - | Antitoxin |
| - | 1981591..1981694 | + | 104 | - | - | Toxin |
| H0481_RS09570 | 1981772..1982857 | - | 1086 | WP_019076535.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| H0481_RS09575 | 1982826..1983098 | - | 273 | WP_003841650.1 | excisionase | - |
| H0481_RS09580 | 1983163..1983405 | - | 243 | WP_115735511.1 | DUF4060 family protein | - |
| H0481_RS09585 | 1983445..1984485 | - | 1041 | WP_115735512.1 | recombinase RecT | - |
| H0481_RS09590 | 1984500..1984622 | - | 123 | Protein_1870 | exodeoxyribonuclease VIII | - |
| H0481_RS09595 | 1984679..1985376 | + | 698 | Protein_1871 | IS1 family transposase | - |
| H0481_RS09600 | 1985311..1985577 | - | 267 | WP_181464078.1 | hypothetical protein | - |
| H0481_RS09605 | 1985599..1986216 | + | 618 | WP_113418152.1 | hypothetical protein | - |
| H0481_RS09610 | 1986213..1986593 | + | 381 | WP_000637185.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1975959..1997744 | 21785 | |
| - | flank | IS/Tn | - | - | 1984873..1985376 | 503 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168530 NZ_CP059288:1981591-1981694 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 239 bp
>AT168530 NZ_CP059288:c1981699-1981461 [Escherichia coli]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGT
CAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGT
CAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
