Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966732..1967003 | Replicon | chromosome |
| Accession | NZ_CP059283 | ||
| Organism | Escherichia coli strain SY3626_hybrid | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966862..1966965 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966732..1967003 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0155_RS09595 | 1963287..1963949 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| H0155_RS09600 | 1963973..1964629 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H0155_RS09605 | 1964731..1964961 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H0155_RS09610 | 1965100..1965474 | + | 375 | WP_023281675.1 | CopC domain-containing protein YobA | - |
| H0155_RS09615 | 1965478..1966350 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H0155_RS09620 | 1966363..1966704 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1966732..1967003 | - | 272 | - | - | Antitoxin |
| - | 1966862..1966965 | + | 104 | - | - | Toxin |
| H0155_RS09625 | 1967100..1967756 | + | 657 | WP_176580606.1 | protein-serine/threonine phosphatase | - |
| H0155_RS09630 | 1967757..1967948 | - | 192 | WP_001338167.1 | YebW family protein | - |
| H0155_RS09635 | 1968053..1968289 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| H0155_RS09640 | 1968407..1969846 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168499 NZ_CP059283:1966862-1966965 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT168499 NZ_CP059283:c1967003-1966732 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
