Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3450227..3450495 | Replicon | chromosome |
| Accession | NZ_CP059281 | ||
| Organism | Escherichia coli strain C9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3450265..3450367 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3450227..3450495 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0272_RS16805 | 3447385..3448824 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H0272_RS16810 | 3448941..3449177 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H0272_RS16815 | 3449282..3449473 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H0272_RS16820 | 3449474..3450130 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 3450227..3450495 | + | 269 | - | - | Antitoxin |
| - | 3450265..3450367 | - | 103 | - | - | Toxin |
| H0272_RS16825 | 3450525..3450866 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H0272_RS16830 | 3450879..3451751 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| H0272_RS16835 | 3451755..3452129 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H0272_RS16840 | 3452268..3452498 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H0272_RS16845 | 3452600..3453256 | + | 657 | WP_181464313.1 | carbon-nitrogen hydrolase family protein | - |
| H0272_RS16850 | 3453280..3453942 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168478 NZ_CP059281:c3450367-3450265 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT168478 NZ_CP059281:3450227-3450495 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
