Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2904579..2904847 | Replicon | chromosome |
| Accession | NZ_CP059279 | ||
| Organism | Escherichia coli strain C7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2904617..2904719 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2904579..2904847 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0271_RS14150 | 2901737..2903176 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H0271_RS14155 | 2903293..2903529 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H0271_RS14160 | 2903634..2903825 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H0271_RS14165 | 2903826..2904482 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2904579..2904847 | + | 269 | - | - | Antitoxin |
| - | 2904617..2904719 | - | 103 | - | - | Toxin |
| H0271_RS14170 | 2904877..2905218 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H0271_RS14175 | 2905231..2906103 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| H0271_RS14180 | 2906107..2906481 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H0271_RS14185 | 2906620..2906850 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H0271_RS14190 | 2906952..2907608 | + | 657 | WP_181464313.1 | carbon-nitrogen hydrolase family protein | - |
| H0271_RS14195 | 2907632..2908294 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168440 NZ_CP059279:c2904719-2904617 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT168440 NZ_CP059279:2904579-2904847 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
