Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2537959..2538230 | Replicon | chromosome |
| Accession | NZ_CP059125 | ||
| Organism | Escherichia coli strain EC45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2537997..2538100 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2537959..2538230 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0X93_RS12260 | 2535116..2536555 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H0X93_RS12265 | 2536673..2536909 | + | 237 | WP_001295499.1 | YebV family protein | - |
| H0X93_RS12270 | 2537014..2537205 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H0X93_RS12275 | 2537206..2537862 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2537959..2538230 | + | 272 | - | - | Antitoxin |
| - | 2537997..2538100 | - | 104 | - | - | Toxin |
| H0X93_RS12280 | 2538258..2538599 | - | 342 | WP_000976492.1 | YebY family protein | - |
| H0X93_RS12285 | 2538612..2539484 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H0X93_RS12290 | 2539488..2539862 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H0X93_RS12295 | 2540001..2540231 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H0X93_RS12300 | 2540333..2540989 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H0X93_RS12305 | 2541013..2541675 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168302 NZ_CP059125:c2538100-2537997 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT168302 NZ_CP059125:2537959-2538230 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
