Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2130760..2131031 | Replicon | chromosome |
| Accession | NZ_CP059119 | ||
| Organism | Escherichia coli strain Ec42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2130890..2130993 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2130760..2131031 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0X94_RS10250 | 2127315..2127977 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H0X94_RS10255 | 2128001..2128657 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H0X94_RS10260 | 2128759..2128989 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H0X94_RS10265 | 2129128..2129502 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H0X94_RS10270 | 2129506..2130378 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| H0X94_RS10275 | 2130391..2130732 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2130760..2131031 | - | 272 | - | - | Antitoxin |
| - | 2130890..2130993 | + | 104 | - | - | Toxin |
| H0X94_RS10280 | 2131128..2131784 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H0X94_RS10285 | 2131785..2131976 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H0X94_RS10290 | 2132081..2132317 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H0X94_RS10295 | 2132435..2133874 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168268 NZ_CP059119:2130890-2130993 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT168268 NZ_CP059119:c2131031-2130760 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
