Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2052816..2052913 Replicon chromosome
Accession NZ_CP059084
Organism Pantoea ananatis strain OC5a

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2052816..2052913 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2052816..2052913 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H0Z12_RS10840 (H0Z12_10835) 2047964..2050036 + 2073 WP_014605680.1 prolyl oligopeptidase family serine peptidase -
H0Z12_RS10845 (H0Z12_10840) 2050020..2050691 - 672 WP_013026063.1 exodeoxyribonuclease X -
H0Z12_RS10850 (H0Z12_10845) 2050691..2050921 - 231 WP_019105100.1 DNA polymerase III subunit theta -
H0Z12_RS10855 (H0Z12_10850) 2051072..2051446 + 375 WP_110286801.1 copper homeostasis periplasmic binding protein CopC -
H0Z12_RS10860 (H0Z12_10855) 2051451..2052326 + 876 WP_110286800.1 copper homeostasis membrane protein CopD -
H0Z12_RS10865 (H0Z12_10860) 2052354..2052701 + 348 WP_110286799.1 YebY family protein -
- 2052816..2052913 + 98 - - Toxin
H0Z12_RS10870 (H0Z12_10865) 2053054..2054598 - 1545 WP_014593871.1 methyl-accepting chemotaxis protein -
H0Z12_RS10875 (H0Z12_10870) 2055087..2055791 - 705 WP_110286798.1 GntR family transcriptional regulator -
H0Z12_RS10880 (H0Z12_10875) 2056071..2057693 + 1623 WP_078828725.1 alpha-glucoside-specific PTS transporter subunit IIBC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 98 bp

>T168234 NZ_CP059084:2052816-2052913 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 98 bp

>AT168234 NZ_CP059084:c2052913-2052816 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References