Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 391868..392034 | Replicon | chromosome |
| Accession | NZ_CP059047 | ||
| Organism | Raoultella ornithinolytica strain DSM 16926 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 391926..392029 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 391868..392034 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYH04_RS01710 | 387006..389066 | + | 2061 | WP_086816201.1 | oligopeptidase B | - |
| HYH04_RS01715 | 389072..389731 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| HYH04_RS01720 | 389810..390040 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| HYH04_RS01725 | 390167..390541 | + | 375 | WP_165458775.1 | CopC domain-containing protein YobA | - |
| HYH04_RS01730 | 390545..391414 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| HYH04_RS01735 | 391431..391769 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 391868..392034 | - | 167 | - | - | Antitoxin |
| - | 391926..392029 | + | 104 | - | - | Toxin |
| HYH04_RS01740 | 392339..392482 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| HYH04_RS01745 | 392603..393574 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| HYH04_RS01750 | 393717..394361 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| HYH04_RS01755 | 394367..394558 | - | 192 | WP_004863962.1 | YebW family protein | - |
| HYH04_RS01760 | 394652..394891 | - | 240 | WP_004863958.1 | YebV family protein | - |
| HYH04_RS01765 | 395006..396439 | - | 1434 | WP_032717103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168175 NZ_CP059047:391926-392029 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT168175 NZ_CP059047:c392034-391868 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
